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Preprints for BioHackathons
Site URL: index.biohackrxiv.org/
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DBCLS BioHackathon 2025 report on the WikiBlitz
https://index.biohackrxiv.org//2025/10/24/7s6da.html
Published: October 24, 2025 00:00
As part of the DBCLS BioHackathon 2025, we organized a WikiBlitz to improve biodiversity knowledge by integrating iNaturalist, GBIF, Wikidata, and Wikipedia. Participants identified local flora and fauna, filling gaps in multilingual Wikipedia articles.…
on2vec: Ontology Embeddings with Graph Neural Networks and Sentence Transformers
https://index.biohackrxiv.org//2025/10/21/4f763.html
Published: October 21, 2025 00:00
Ontologies provide structured vocabularies and relationships essential for organizing biological knowledge, yet their symbolic nature limits integration with modern machine learning methods. Leveraging recent advances in graph neural networks (GNNs) and…