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A place for Epiverse-TRACE developers to share their reflections, learnings, and showcase their work.
Site URL: epiverse-trace.github.io/blog.html
Feed URL: epiverse-trace.github.io/blog.xml
Posts: 9
Followers: 2
linelist v2.0.0
https://epiverse-trace.github.io/posts/linelist_v2.0.0/
Published: April 28, 2025 00:00
We are very excited to announce the release of a new linelist version v2.0.0. Here is an automatically generated summary of the changes in this version. Breaking changes The linelist package is now dependent on R 4.1.0, in line with Epiverse-TRACE policy…
cleanepi v1.1.0
https://epiverse-trace.github.io/posts/cleanepi_v1.1.0/
Published: April 21, 2025 00:00
We are very excited to announce the release of a new cleanepi version v1.1.0. Here is an automatically generated summary of the changes in this version. Bug fixes Fixed a bug in the index for empty rows returned by print_report() after…
Integration testing in Epiverse-TRACE
https://epiverse-trace.github.io/posts/integration-testing/
Published: April 14, 2025 00:00
In Epiverse-TRACE we develop a suite of R packages that tackle predictable tasks in infectious disease outbreak response. One of the guiding software design principles we have worked towards is interoperability of tooling, both between Epiverse software,…
simulist v0.5.0
https://epiverse-trace.github.io/posts/simulist_v0.5.0/
Published: March 26, 2025 00:00
We are very excited to announce the release of a new simulist version v0.5.0. Here is an automatically generated summary of the changes in this version. This minor version release expands the scope of simulist to include two new post-processing functions:…
Key considerations for retiring/superseding an R package
https://epiverse-trace.github.io/posts/superseding-bpmodels/
Published: February 3, 2025 00:00
Most of our work in Epiverse TRACE involves either developing an R package from scratch or adopting and maintaining an existing R package. In the former case, decision-making during development is guided by internal policies documented in the…
Licensing R packages with code and data: learnings from submitting to CRAN
https://epiverse-trace.github.io/posts/data-licensing-cran.html
Published: January 20, 2025 00:00
Note This is a follow-up blog post to the Dual licensing R packages with code and data post published in September 2024. It contains learnings from submitting epiparameter to CRAN with a dual license. Overview of previous blog post on R package…
simulist v0.4.0
https://epiverse-trace.github.io/posts/simulist_v0.4.0/
Published: January 10, 2025 00:00
We are very excited to announce the release of a new simulist version v0.4.0. This is the first version of simulist to be on CRAN (the package can now be installed with install.packages()). Here is an automatically generated summary of the changes in this…
epiparameter v0.4.0
https://epiverse-trace.github.io/posts/epiparameter_v0.4.0/
Published: January 8, 2025 00:00
We are very excited to announce the release of a new epiparameter version v0.4.0. This is the first version of epiparameter to be on CRAN (the package can now be installed with install.packages()). Here is an automatically generated summary of the changes…
Things that can go wrong when using renv
https://epiverse-trace.github.io/posts/renv-complications/
Published: December 31, 2024 00:00
Throughout the Epiverse project, we use the renv R package to ensure reproducibility of the training materials and the pipelines we are providing. But we sometimes get reports from users who struggle to rebuild the environment and run the code. In this…